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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
THYM cis rs10935120 1 rs2370578 chr3:134199612 CEP63 chr3:134204575-134293852:+ 0.4 5.69 1.38E-7 Height
THYM cis rs10935120 1 rs2370641 chr3:134222161 ANAPC13 chr3:134196547-134204865:- 0.58 8.01 2.88E-12 Height
THYM cis rs10935120 1 rs2370641 chr3:134222161 CEP63 chr3:134204575-134293852:+ 0.41 6.04 2.93E-8 Height
THYM cis rs10935120 1 rs2370642 chr3:134222136 ANAPC13 chr3:134196547-134204865:- 0.58 8.05 2.33E-12 Height
THYM cis rs10935120 1 rs2370642 chr3:134222136 CEP63 chr3:134204575-134293852:+ 0.4 5.81 8.19E-8 Height
THYM cis rs9815354 1 rs2371623 chr3:41761083 ULK4 chr3:41288091-42003660:- 1.01 11.17 5.4E-19 Diastolic blood pressure
THYM cis rs9815354 1 rs2371627 chr3:41839219 ULK4 chr3:41288091-42003660:- 1.02 10.9 1.98E-18 Diastolic blood pressure
THYM cis rs10935120 1 rs2373865 chr3:134291556 ANAPC13 chr3:134196547-134204865:- -0.59 -8.13 1.58E-12 Height
THYM cis rs10935120 1 rs2373865 chr3:134291556 CEP63 chr3:134204575-134293852:+ -0.41 -5.87 6.33E-8 Height
THYM cis rs3820928 1 rs2396433 chr2:227772502 RHBDD1 chr2:227700773-227861591:+ -0.31 -4.56 1.54E-5 Pulmonary function
THYM cis rs9457247 1 rs239935 chr6:167411788 RNASET2 chr6:167343008-167412795:- -0.44 -7.19 1.5E-10 Crohn's disease
THYM cis rs2120019 1 rs2415255 chr15:75332412 PPCDC chr15:75315927-75343066:+ 0.27 4.85 4.8E-6 Blood trace element (Zn levels)
THYM cis rs2243480 1 rs2420170 chr7:65656053 CCT6P1 chr7:65216092-65228661:+ -0.67 -5.68 1.48E-7 Diabetic kidney disease
THYM cis rs2243480 1 rs2420171 chr7:65637760 CCT6P1 chr7:65216092-65228661:+ -0.67 -5.68 1.48E-7 Diabetic kidney disease
THYM cis rs6585827 1 rs2421017 chr10:124148167 PLEKHA1 chr10:124134220-124191866:+ -0.26 -4.17 6.69E-5 Height